We present the genome assembly of a miniature tomato cultivar, Micro-Tom (Shirasawa & Ariizumi, pp. 367–374). As there are genetic variations in the Micro-Tom lines (Nagasaki et al. 2024, DNA Res 13: dsae016), the genome data of the standard line used in NBRP-Tomato, where massive genomic and genetic resources are developed, was required. We therefore launched the genome project on this line at JSOL2022 meeting (October 8–9, 2022, at Okayama University) and decided to present the result in the next meeting. We used a high-fidelity long-read sequencing technology and successfully completed the analysis within a year. The data was released through bioRxiv (October 31, 2023) and the achievement was announced at JSOL2023 (November 9–10, 2023, at Osaka Metropolitan University), thus fulfilling the promise. Subsequently, the genome data was honorably selected as the NCBI reference sequence of tomato due to the highest quality assembly reported to date.
Illustration by Kenta Shirasawa (Kazusa DNA Research Institute) using Circos program.